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Patient Specimen
Sample (PDX or In Vitro Culture)
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Patient ID
898857
Open Patient
Specimen ID
211-R
Disease Body Location
Skin
OncoTree Code
MEL
CTEP SDC Code
10053571 - Melanoma
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Abdomen/Small Bowel
Provided Tissue Origin
Metastatic Site
Collection Date
07/2020
Age at Sampling
68
General Model Information
Model Notes
NGS Characterization
Able to Viably Passage
into Athymic Nude Mice?
Yes
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*32:01
A*68:02
B*14:02
B*44:02
C*05:01
C*08:02
6/6
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
1
2
3
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
CAF Culture
898857-211-R-J2-CAF
19
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
Organoid Culture
898857-211-R-V1-organoid
12
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDC: Mixed Tumor Culture
898857-211-R-J1-PDC
31
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDX
898857-211-R
2
Available
Not Applicable
Available Upon Request
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
CAF Culture
J2-CAF
No
Yes
No
No
No
Organoid Culture
V1-organoid
No
Yes
Yes
Yes
Yes
PDC: Mixed Tumor Culture
J1-PDC
No
Yes
Yes
Yes
Yes
PDX
QFY
No
0
Yes
Yes
Yes
Yes
PDX
QF0
No
0
Yes
No
No
No
PDX
QF2
No
0
Yes
No
No
No
PDX
QFX
No
0
Yes
No
No
No
PDX
QF1
No
0
Yes
Yes
Yes
Yes
PDX
QF0C05
No
1
Yes
Yes
Yes
Yes
PDX
QF0C08
No
1
Yes
Yes
Yes
Yes
PDX
QFYAW2C43
No
2
Yes
Yes
Yes
Yes
PDX
QFYAW2
No
1
Yes
Yes
Yes
Yes
Patient/Originator Specimen
Originator
Yes
Yes
Yes
Yes
Yes
Export
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