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Patient ID
BL0293
Open Patient
Specimen ID
F563
Disease Body Location
Genitourinary
OncoTree Code
SCB
CTEP SDC Code
10018192 - Urothelial/bladder cancer, NOS
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Bladder
Provided Tissue Origin
Primary
Collection Date
07/2010
Age at Sampling
77
General Model Information
Model Notes
NGS Characterization
Able to Viably Passage
into Athymic Nude Mice?
Yes
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*02:01
A*03:01
B*07:02
B*35:01
C*04:01
C*07:02
5/5
PDX Metastatic in NSG?
Yes
Location of Observed Metastases
Liver, lung, axillary node, peritoneum, spine
Timing of Observed Metastasis
Spontaneous & Post De-bulking Metastasis
Penetrance
70% (n=7, spontaneous); 100% (n=7, post-debulking)
TCIA Imaging Data Available
Yes
Link to TCIA
https://doi.org/10.7937/tcia.2019.b6u7wmqw
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
Organoid Culture
BL0293-F563-V1-organoid
9
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDX
BL0293-F563
5
Available
Not Applicable
Available Upon Request
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
Organoid Culture
V1-organoid
No
Yes
Yes
Yes
Yes
PDX
M672
No
3
Yes
No
No
No
PDX
M672M291M322
No
5
No
No
No
No
PDX
M672M291M323
No
5
Yes
Yes
Yes
Yes
PDX
M672M291M321
No
5
Yes
Yes
Yes
Yes
PDX
M670
No
3
Yes
No
No
No
PDX
M671
No
3
Yes
Yes
Yes
Yes
PDX
M671M14
No
4
Yes
Yes
Yes
Yes
PDX
M671M16
No
4
Yes
Yes
Yes
Yes
PDX
M671M698
No
4
Yes
No
No
No
Patient/Originator Specimen
ORIGINATOR
Yes
Yes
No
No
No
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