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Patient ID
295223
Open Patient
Specimen ID
140-R
Disease Body Location
Head and Neck
OncoTree Code
HNSC
CTEP SDC Code
10060121 - H & N squamous cell car., NOS
Human Pathogen
Testing Summary
HPV16+
Tissue Type
Resection
Tissue Collected
Neck [L]
Provided Tissue Origin
Primary
Collection Date
05/2014
Age at Sampling
74
General Model Information
Model Notes
NGS Characterization
Amplified: 11q13.3 (ERBB2, PIK3CB, CCND1, FGF19, FGF4, FGF3), YAP1, PIK3CA
Able to Viably Passage
into Athymic Nude Mice?
Unknown
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*03:01
A*03:01
B*07:02
B*07:02
C*07:02
C*07:02
5/5
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
1
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
PDX
295223-140-R
1
Available
Not Applicable
Available
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
PDX
CS3
No
0
Yes
Yes
Yes
Yes
PDX
CS4
No
0
Yes
No
No
No
PDX
CS5
No
0
Yes
No
No
No
PDX
CS6
No
0
Yes
No
No
No
PDX
CS7
No
0
Yes
No
No
No
PDX
CS3G62
No
1
Yes
No
No
No
PDX
CS3G63
No
1
Yes
No
No
No
PDX
CS5GA2
No
1
Yes
Yes
Yes
Yes
PDX
CS6G66
No
1
Yes
Yes
Yes
Yes
PDX
CS3G61
No
1
No
Yes
Yes
Yes
PDX
CS7G71
No
1
Yes
Yes
Yes
Yes
Patient/Originator Specimen
ORIGINATOR
Yes
Yes
No
No
Yes
Export
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