Skip to Content
Contact PDMR
|
PDMR Database User Guide
Home
Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
Reports
Search
Specimen
Cancel
Patient ID
412248
Open Patient
Specimen ID
322-R
Disease Body Location
Breast
OncoTree Code
IDC
CTEP SDC Code
10006190 - Invasive breast carcinoma
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Breast [L]
Provided Tissue Origin
Primary
Collection Date
11/2016
Age at Sampling
55
General Model Information
Model Notes
PDX IHC/Path: ER-,PR-,Her2 Equivocal (2+).
NGS Characterization
Amplified: ERBB2 not amplified
Able to Viably Passage
into Athymic Nude Mice?
Yes
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*02:01
A*02:01
B*57:01
B*57:01
C*06:02
C*06:02
6/6
PAM50 Classifier
Basal
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
1
2
3
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
PDX
412248-322-R
2
Available
Not Applicable
Available Upon Request
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
PDX
QXT
No
0
Yes
No
No
No
PDX
QXU
No
0
Yes
No
No
No
PDX
QXC
No
0
Yes
Yes
Yes
Yes
PDX
QXCXA7
No
1
Yes
Yes
Yes
Yes
PDX
QXTTN3WN6
No
2
Yes
Yes
Yes
Yes
PDX
QXTTN4
No
1
Yes
Yes
Yes
Yes
PDX
QXTTN7
No
1
Yes
Yes
Yes
Yes
PDX
QXUVX9
No
1
Yes
Yes
Yes
Yes
PDX
QXV
No
0
Yes
No
No
No
Patient/Originator Specimen
ORIGINATOR
Yes
Yes
Yes
Yes
Yes
Export
1 - 10