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Patient ID
428986
Open Patient
Specimen ID
081-R
Disease Body Location
Breast
OncoTree Code
MASCC
CTEP SDC Code
10006285 - Breast cancer, NOS
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Breast
Provided Tissue Origin
Primary
Collection Date
03/2017
Age at Sampling
69
General Model Information
Model Notes
PDX IHC/Path: ER-,PR-,Her2-
PDX Derivation/Derivation: Alternative implant site to MFP.
NGS Characterization
Able to Viably Passage
into Athymic Nude Mice?
Yes
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Mammary Fat Pad
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*01:01
A*01:01
B*37:01
B*57:01
C*06:02
C*06:02
5/5
PAM50 Classifier
Basal
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
1
2
3
4
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
Organoid Culture
428986-081-R-V2-organoid
15
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDC: Mixed Tumor Culture
428986-081-R-J1-PDC
24
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDX
428986-081-R
2
Available
Not Applicable
Available Upon Request
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
Organoid Culture
V2-organoid
No
Yes
Yes
Yes
Yes
PDC: Mixed Tumor Culture
J1-PDC
No
Yes
Yes
Yes
Yes
PDX
AL-VEP
No
0
Yes
No
No
No
PDX
AL-VEQ
No
0
Yes
Yes
Yes
Yes
PDX
AL-VEP_AL-G82_AL-C83
No
2
Yes
No
No
No
PDX
AL-VEQ_AL-J19_RG-AL-P52
No
2
Yes
Yes
Yes
Yes
PDX
AL-VEP_AL-G99_AL-N08
No
2
Yes
Yes
Yes
Yes
PDX
AL-VEP_AL-G78
No
1
Yes
No
No
No
PDX
AL-VEP_AL-J01
No
1
Yes
Yes
Yes
Yes
Patient/Originator Specimen
ORIGINATOR
Yes
Yes
No
No
No
Export
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