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Patient ID
414838
Open Patient
Specimen ID
212-R
Disease Body Location
Breast
OncoTree Code
IDC
CTEP SDC Code
10006190 - Invasive breast carcinoma
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Breast [L]
Provided Tissue Origin
Primary
Collection Date
07/2017
Age at Sampling
52
General Model Information
Model Notes
PDX Path/IHC: IHC: ER-, PR-, Her2 Equivocal (2+).
PDOrg Derivation/Growth: CLX Implantation Site: Mammary Fat Pad
PDOrg IHC/Path: GATA-3+, GCDFP-15-
NGS Characterization
Amplified: ERBB2 not amplified
Able to Viably Passage
into Athymic Nude Mice?
Yes
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*03:01
A*23:01
B*07:02
B*15:03
C*02:10
C*07:02
6/6
PAM50 Classifier
Basal
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
no data found
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
CAF Culture
414838-212-R-J1-CAF
13
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
Organoid Culture
414838-212-R-V2-organoid
12
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDC: Mixed Tumor Culture
414838-212-R-J2-PDC
18
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDX
414838-212-R
2
Available
Not Applicable
Available Upon Request
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
CAF Culture
J1-CAF
No
Yes
No
No
No
Organoid Culture
V2-organoid
No
Yes
Yes
Yes
Yes
PDC: Mixed Tumor Culture
J2-PDC
No
Yes
Yes
Yes
Yes
PDX
AL-Y5E
No
0
Yes
Yes
Yes
Yes
PDX
AL-Y5C
No
0
Yes
No
No
No
PDX
AL-Y5F
No
0
Yes
No
No
No
PDX
AL-Y5C_AL-XC6
No
1
Yes
Yes
Yes
Yes
PDX
AL-Y5CXC8YA9
No
2
Yes
Yes
Yes
Yes
PDX
AL-Y5E_AL-WY3YK7
No
2
Yes
Yes
Yes
Yes
PDX
AL-Y5EWY7
No
1
Yes
Yes
Yes
Yes
PDX
AL-Y5F_AL-XW4
No
1
Yes
Yes
Yes
Yes
Patient/Originator Specimen
ORIGINATOR
Yes
Yes
No
No
No
Export
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