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Patient ID
958767
Open Patient
Specimen ID
090-R
Disease Body Location
Head and Neck
OncoTree Code
OCSC
CTEP SDC Code
10024534 - Lip/oral cavity squam. cell car.
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Tongue [L. Lateral]
Provided Tissue Origin
Primary
Collection Date
03/2015
Age at Sampling
59
General Model Information
Model Notes
NGS Characterization
Able to Viably Passage
into Athymic Nude Mice?
Unknown
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*03:01
A*11:01
B*08:01
B*35:01
C*04:01
C*07:01
6/6
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
1
2
3
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
PDC: Mixed Tumor Culture
958767-090-R-J1-PDC
21
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDX
958767-090-R
3
Available
Not Applicable
Available Upon Request
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
PDC: Mixed Tumor Culture
J1-PDC
No
Yes
Yes
Yes
Yes
PDX
H50
No
0
Yes
Yes
Yes
Yes
PDX
H50WF1HJ3
No
2
Yes
Yes
Yes
Yes
PDX
H50WF2HK9
No
2
Yes
Yes
Yes
Yes
PDX
H50WF4HL6
No
2
Yes
Yes
Yes
Yes
PDX
H50WF1HJ6M187
No
3
Yes
Yes
Yes
Yes
PDX
H50WF2HL0M193
No
3
Yes
Yes
Yes
Yes
Export
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