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Patient ID
253963
Open Patient
Specimen ID
270-R
Disease Body Location
Breast
OncoTree Code
BRCNOS
CTEP SDC Code
10006190 - Invasive breast carcinoma
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Breast [RUIQ]
Provided Tissue Origin
Primary
Collection Date
09/2022
Age at Sampling
58
General Model Information
Model Notes
PDX IHC/Path: ER-, PR-, Her2-, AR-, chromogranin-, synaptophysin-
NGS Characterization
Able to Viably Passage
into Athymic Nude Mice?
Yes
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*23:01
A*30:02
B*07:02
B*45:01
C*07:02
C*16:01
6/6
PAM50 Classifier
Basal
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
1
2
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
PDX
253963-270-R
3
Available
Not Applicable
Available Upon Request
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
PDX
HP2
No
0
Yes
No
No
No
PDX
HP3
No
0
Yes
No
No
No
PDX
HP0
No
0
Yes
Yes
Yes
Yes
PDX
HP0A57
No
1
Yes
Yes
Yes
Yes
PDX
HP2FT4
No
1
Yes
Yes
Yes
Yes
PDX
HP0A57C77
No
2
Yes
Yes
Yes
Yes
PDX
HP2FT5C28
No
2
Yes
Yes
Yes
Yes
PDX
HP0A57C76F03
No
3
Yes
Yes
Yes
Yes
Patient/Originator Specimen
ORIGINATOR
Yes
Yes
Yes
Yes
Yes
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