Skip to Content
Contact PDMR
|
PDMR Database User Guide
Home
Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
Reports
Search
Specimen
Cancel
Patient ID
133474
Open Patient
Specimen ID
215-R6
Disease Body Location
Digestive/Gastrointestinal
OncoTree Code
IHCH
CTEP SDC Code
10004669 - Cholangiocar.- intra/extrahepatic
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Lung [RLL]
Provided Tissue Origin
Metastatic Site
Collection Date
08/2023
Age at Sampling
37
General Model Information
Model Notes
PDX and PDC CLX Path/IHC: Rhabdoid features observed
NGS Characterization
Able to Viably Passage
into Athymic Nude Mice?
Yes
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*01:01
A*26:01
B*07:02
B*57:01
C*06:02
C*07:02
6/6
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
1
2
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
Organoid Culture
133474-215-R6-V2-organoid
11
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDX
133474-215-R6
2
Available
Not Applicable
Available Upon Request
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
Organoid Culture
V2-organoid
No
Yes
Yes
Yes
Yes
PDX
PVN
No
0
Yes
Yes
Yes
Yes
PDX
PVT
No
0
Yes
No
No
No
PDX
ORIGINATOR
Yes
Yes
Yes
Yes
Yes
PDX
PVP
No
0
Yes
Yes
Yes
Yes
PDX
PVPR24
No
1
Yes
Yes
Yes
Yes
PDX
PVPR25
No
1
Yes
Yes
Yes
Yes
PDX
PVPR21T33
No
2
Yes
Yes
Yes
Yes
PDX
PVPR24T26
No
2
Yes
Yes
Yes
Yes
Export
1 - 9