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Patient ID
114868
Open Patient
Specimen ID
125-R
Disease Body Location
Head and Neck
OncoTree Code
OPHSC
CTEP SDC Code
10034819 - Pharyngeal squam. cell carcinoma
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Tonsil [right]
Provided Tissue Origin
Primary
Collection Date
05/2016
Age at Sampling
72
General Model Information
Model Notes
NGS Characterization
FGFR3::TACC3 fusion detected
Able to Viably Passage
into Athymic Nude Mice?
Unknown
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*01:01
A*01:01
B*51:01
B*51:01
C*02:02
C*02:02
4/4
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
1
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
CAF Culture
114868-125-R-J1-CAF
14
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDX
114868-125-R
1
Available
Not Applicable
Available
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
CAF Culture
J1-CAF
No
Yes
No
No
No
PDX
FEW
No
0
Yes
No
No
No
PDX
FCW
No
0
Yes
No
No
No
PDX
FAW
No
0
Yes
No
No
No
PDX
FFW
No
0
Yes
No
No
No
PDX
FCWC50
No
1
Yes
Yes
Yes
Yes
PDX
FCWC69
No
1
Yes
Yes
Yes
Yes
PDX
FEWC21
No
1
Yes
Yes
Yes
Yes
PDX
FEWC31
No
1
Yes
Yes
Yes
Yes
Patient/Originator Specimen
ORIGINATOR
Yes
Yes
Yes
Yes
Yes
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