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Patient ID
119177
Open Patient
Specimen ID
322-R1
Disease Body Location
Musculoskeletal
OncoTree Code
SYNS
CTEP SDC Code
10042866 - Synovial sarcoma
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Intracardiac Mass
Provided Tissue Origin
Primary
Collection Date
11/2016
Age at Sampling
40
General Model Information
Model Notes
NGS Characterization
SS18::SSX1 fusion detected
Able to Viably Passage
into Athymic Nude Mice?
Yes
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*02:01
A*68:01
B*35:01
B*40:01
C*03:04
C*04:01
7/7
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
1
2
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
CAF Culture
119177-322-R1-J1-CAF
17
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
Organoid Culture
119177-322-R1-V1-organoid
13
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDX
119177-322-R1
2
Available
Not Applicable
Available Upon Request
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
CAF Culture
J1-CAF
No
Yes
No
No
No
Organoid Culture
V1-organoid
No
Yes
Yes
Yes
Yes
PDX
PXW
No
0
Yes
Yes
Yes
Yes
PDX
PXWJH4
No
1
Yes
Yes
Yes
Yes
PDX
PXWJH4KA1
No
2
Yes
Yes
Yes
Yes
PDX
PXWJH4KA3
No
2
Yes
Yes
Yes
Yes
PDX
PXWJH5
No
1
Yes
Yes
Yes
Yes
PDX
PXWJH6
No
1
Yes
Yes
Yes
No
Export
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