Skip to Content
Contact PDMR
|
PDMR Database User Guide
Home
Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
Reports
Search
Specimen
Cancel
Patient ID
521955
Open Patient
Specimen ID
158-R4
Disease Body Location
Digestive/Gastrointestinal
OncoTree Code
PAAD
CTEP SDC Code
10052747 - Adenocarcinoma - pancreas
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Tumor in colonic Fat
Provided Tissue Origin
Metastatic Site
Collection Date
06/2016
Age at Sampling
64
General Model Information
Model Notes
NGS Characterization
Able to Viably Passage
into Athymic Nude Mice?
Yes
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*02:01
A*24:02
B*18:01
B*44:05
C*02:02
C*07:01
6/6
PDX Metastatic in NSG?
Yes
Location of Observed Metastases
Lung, Para-vertebral muscle, lymph nodes
Timing of Observed Metastasis
Spontaneous & Post De-bulking Metastasis
Penetrance
40% (n=10, spontaneous); 70% (n=10, de-bulking)
TCIA Imaging Data Available
Yes
Link to TCIA
https://doi.org/10.7937/q37d-vh79
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
1
2
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
Organoid Culture
521955-158-R4-V3-organoid
10
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDX
521955-158-R4
3
Available
Not Applicable
Available Upon Request
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
Organoid Culture
V3-organoid
No
Yes
Yes
Yes
Yes
PDX
H2A
No
0
Yes
No
No
No
PDX
FY6
No
0
Yes
Yes
Yes
Yes
PDX
FY7
No
0
Yes
No
No
No
PDX
FY8
No
0
Yes
Yes
Yes
Yes
PDX
FY6D80
No
1
Yes
No
No
No
PDX
FY8FC7
No
1
Yes
No
No
No
PDX
H2AD52DW4_RG-G80
No
3
Yes
Yes
Yes
Yes
PDX
H2AD53
No
1
Yes
No
No
No
PDX
FY6D77
No
1
No
Yes
Yes
Yes
PDX
FY8FC5
No
1
No
Yes
Yes
Yes
PDX
H2AD52DW3
No
2
No
Yes
Yes
Yes
Patient/Originator Specimen
ORIGINATOR
Yes
Yes
Yes
Yes
Yes
Export
1 - 13