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Patient ID
625472
Open Patient
Specimen ID
104-R
Disease Body Location
Digestive/Gastrointestinal
OncoTree Code
COAD
CTEP SDC Code
10009951 - Adenocarcinoma - colon
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Shoulder [L. Posterior]
Provided Tissue Origin
Metastatic Site
Collection Date
04/2015
Age at Sampling
66
General Model Information
Model Notes
NGS Characterization
Able to Viably Passage
into Athymic Nude Mice?
Unknown
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-High
HLA Profile(s)
CMS Category
CMS1
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
3 of 5 models were passaged/sac'd ~56 days creating appearance of growth rate decline.
1
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
CAF Culture
625472-104-R-J1-CAF
12
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDX
625472-104-R
1
Available
Not Applicable
Available
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
CAF Culture
J1-CAF
No
Yes
No
No
No
PDX
H66
No
0
Yes
No
No
No
PDX
H67
No
0
Yes
No
No
No
PDX
H68
No
0
Yes
Yes
Yes
Yes
PDX
H69
No
0
Yes
Yes
Yes
Yes
PDX
H70
No
0
Yes
No
No
No
PDX
H67WG0
No
1
Yes
Yes
Yes
Yes
PDX
H68WG3
No
1
Yes
Yes
Yes
Yes
PDX
H69HC1
No
1
Yes
Yes
Yes
Yes
PDX
H70HC4
No
1
Yes
Yes
Yes
Yes
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