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Patient ID
779769
Open Patient
Specimen ID
127-R
Disease Body Location
Digestive/Gastrointestinal
OncoTree Code
READ
CTEP SDC Code
10038045 - Adenocarcinoma - rectum
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Rectum
Provided Tissue Origin
Primary
Collection Date
05/2015
Age at Sampling
60
General Model Information
Model Notes
NGS Characterization
Able to Viably Passage
into Athymic Nude Mice?
Yes
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*02:01
A*03:01
B*07:02
B*40:02
C*02:02
C*07:02
4/4
CMS Category
CMS4
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
1
2
Total of 9 of 10 models were passaged/sac'd ~60, 103 and 137 days creating appearance of growth rate decline.
3
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
Organoid Culture
779769-127-R-V2-organoid
9
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDC: Mixed Tumor Culture
779769-127-R-J1-PDC
22
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDX
779769-127-R
4
Available
Not Applicable
Available Upon Request
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
Organoid Culture
V2-organoid
No
Yes
Yes
Yes
Yes
PDC: Mixed Tumor Culture
J1-PDC
No
Yes
Yes
Yes
Yes
PDX
VS0
No
0
Yes
No
No
No
PDX
VR7
No
0
Yes
No
No
No
PDX
VR7WA7
No
1
Yes
Yes
Yes
Yes
PDX
VS0DY7WQ3Z21
No
3
Yes
Yes
Yes
Yes
PDX
VS0DY7WQ5C22
No
3
Yes
Yes
Yes
Yes
PDX
VS0DY7WQ7
No
2
Yes
No
No
No
PDX
VS0DY7
No
1
Yes
Yes
Yes
Yes
Export
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