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Patient ID
894883
Open Patient
Specimen ID
131-R
Disease Body Location
Digestive/Gastrointestinal
OncoTree Code
ANSC
CTEP SDC Code
10041840 - Squamous cell carcinoma - anus
Human Pathogen
Testing Summary
EBV variable, HPV16+
Tissue Type
Resection
Tissue Collected
Buttock [L]
Provided Tissue Origin
Primary
Collection Date
05/2015
Age at Sampling
49
General Model Information
Model Notes
NGS Characterization
Able to Viably Passage
into Athymic Nude Mice?
Unknown
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*02:01
A*03:01
B*07:02
B*44:02
C*05:01
C*07:02
4/4
PDX Metastatic in NSG?
Yes
Location of Observed Metastases
Lung, axillary node
Timing of Observed Metastasis
Post De-bulking Metastasis
Penetrance
28% (n=13, 74d)
TCIA Imaging Data Available
No
Link to TCIA
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
1
2
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
PDX
894883-131-R
3
Available
Not Applicable
Available
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
PDX
ND7
No
0
Yes
No
No
No
PDX
NE0
No
0
Yes
No
No
No
PDX
ND9
No
0
Yes
No
No
No
PDX
ND8
No
0
Yes
No
No
No
PDX
ND8W86
No
1
Yes
Yes
Yes
Yes
PDX
ND9W87
No
1
Yes
Yes
Yes
Yes
PDX
ND8W86EA0
No
2
Yes
Yes
Yes
Yes
PDX
ND8W86EA1_RG-YJ5
No
3
Yes
Yes
Yes
Yes
Export
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