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Patient ID
865297
Open Patient
Specimen ID
335-R
Disease Body Location
Skin
OncoTree Code
MEL
CTEP SDC Code
10053571 - Melanoma
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Lymph Node [R Axillary]
Provided Tissue Origin
Metastatic Site
Collection Date
12/2021
Age at Sampling
58
General Model Information
Model Notes
NGS Characterization
Able to Viably Passage
into Athymic Nude Mice?
Yes
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*24:02
A*26:01
B*38:01
B*55:01
C*03:03
C*12:03
6/6
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
1
2
3
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
Organoid Culture
865297-335-R-V1-organoid
22
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDX
865297-335-R
2
Available
Not Applicable
Available Upon Request
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
Organoid Culture
V1-organoid
No
Yes
Yes
Yes
Yes
PDX
AW3
No
0
Yes
Yes
Yes
Yes
PDX
AW4
No
0
Yes
Yes
Yes
Yes
PDX
AW6
No
0
Yes
No
No
No
PDX
AW7T42
No
1
Yes
Yes
Yes
Yes
PDX
AW7T41
No
1
Yes
No
No
No
PDX
AW7T43
No
1
Yes
No
No
No
PDX
AW7T45
No
1
Yes
No
No
No
PDX
AW3T01
No
1
Yes
Yes
Yes
Yes
PDX
AW4T36
No
1
Yes
Yes
Yes
Yes
PDX
AW4T36U73
No
2
Yes
Yes
Yes
Yes
Export
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