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Patient ID
949853
Open Patient
Specimen ID
013-R
Disease Body Location
Digestive/Gastrointestinal
OncoTree Code
GIST
CTEP SDC Code
10051066 - Gastrointestinal stromal tumor
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Stomach
Provided Tissue Origin
Primary
Collection Date
01/2016
Age at Sampling
39
General Model Information
Model Notes
NGS Characterization
Able to Viably Passage
into Athymic Nude Mice?
Yes
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*02:01
A*31:01
B*27:05
B*27:05
C*01:02
C*02:02
6/6
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
1
Wide variability/heterogeneity in growth rates, curves for 2 PDXs shown to demonstrate range of growth rates
2
Wide variability/heterogeneity in growth rates, curves for 2 PDXs shown to demonstrate range of growth rates
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
CAF Culture
949853-013-R-J1-CAF
12
Not Applicable
Available
Not Applicable
Not Applicable
Not Applicable
PDX
949853-013-R
2
Available
Not Applicable
Available Upon Request
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
CAF Culture
J1-CAF
No
Yes
No
No
No
PDX
CVY
No
0
Yes
Yes
Yes
Yes
PDX
CVV
No
0
Yes
Yes
Yes
Yes
PDX
CVYVL0
No
1
Yes
Yes
Yes
No
PDX
CVYVK6
No
1
Yes
Yes
Yes
Yes
PDX
CVYVK8
No
1
Yes
Yes
Yes
Yes
PDX
CVYVL3A19
No
2
Yes
Yes
Yes
Yes
Patient/Originator Specimen
ORIGINATOR
Yes
No
Yes
Yes
Yes
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