Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

114551

080-T

Value Required

M667M227C30

Disease Body Location

Head and Neck

ACCC

10039397 - Salivary gland cancer

Value Required

PDX

Tumor Biopsy

Patient/Originating
Specimen

Passage of this Sample

2

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	85%	5%	10%	<Unknown>

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.13.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ARID1A	p.S795Tfs*38	0.1538	65	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1A	p.G797Rfs*20	0.1029	68	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	BCOR	p.R1231Gfs*7	0.3053	393	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	EP400	p.S23Qfs*4	0.1250	40	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	ERRFI1	-	0.4400	25	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FBXW7	p.R479Q	0.4417	163	Missense_Mutation	Oncogenic	Loss-of-function	v3.14
	FBXW7	p.R222*	0.5000	132	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.P3548Qfs*2	0.0839	143	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	NOTCH1	p.V1671I	0.4375	32	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v3.14
	NOTCH3	p.X268_splice	0.0782	243	Splice_Site	Likely Oncogenic	Likely Gain-of-function	v3.14
	PMS1	p.E543*	0.1237	97	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	PMS1	p.C546Ffs*4	0.1042	96	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	SMARCA4	p.P344Hfs*67	0.1250	48	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	SMARCA4	p.H346Afs*41	0.1250	48	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	SMARCA4	p.Q347Hfs*65	0.1395	43	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	SMARCA4	p.K348Afs*38	0.1429	42	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.R175H	0.5000	104	Missense_Mutation	Oncogenic	Loss-of-function	v3.14

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