Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

119387

122-R

Value Required

XYJN20V53

Disease Body Location

Respiratory/Thoracic

LUSC

10025126 - Squamous cell lung carcinoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

2

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Low grade or well differentiated	90%	5%	5%	2+ (Moderate)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.21.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.21.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ARID1A	p.H1170Qfs*22	0.4830	323	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.5
	KMT2D	p.L2185Wfs*79	0.4324	37	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.5
	RAD50	p.N934Kfs*10	0.3333	30	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.5
	TP53	p.R273C	0.4318	176	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.5

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