Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

447624

303-R

Value Required

CACT50U96

Disease Body Location

Digestive/Gastrointestinal

ANSC

10041840 - Squamous cell carcinoma - anus

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

2

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	60%	10%	30%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.21.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.21.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ATXN2	p.Q180Hfs*26	0.3000	60	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.7
	ATXN2	p.Q177Afs*69	0.2812	64	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.7
	KMT2D	p.E847*	0.4535	172	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.7
	LATS2	p.P477_A480dup	1.0000	8	In_Frame_Ins	Likely Oncogenic	Unknown	v4.7
	PTEN	p.G127E	1.0000	106	Missense_Mutation	Oncogenic	Loss-of-function	v4.7
	RB1	p.X830_splice	1.0000	12	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v4.7

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