Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

253963

270-R

Value Required

HP0

Disease Body Location

Breast

BRCNOS

10006190 - Invasive breast carcinoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

0

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	High grade or poorly differentiated	85%	0%	15%	Absent/No Inflammation

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.4.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.4.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.4.21.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.4.21.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	BRCA2	p.S2835P	1.0000	83	Missense_Mutation	Inconclusive	Inconclusive	v4.26
	DICER1	p.N998Ifs*3	0.3532	252	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.26
	ERRFI1	-	0.3793	29	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v4.26
	KDM5C	p.V1075Rfs*69	0.4038	530	Frame_Shift_Del	Likely Oncogenic	Loss-of-function	v4.26
	KMT2C	p.X338_splice	0.0840	810	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v4.26
	NOTCH1	p.V1671I	1.0000	64	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v4.26
	TP53	p.F109Wfs*41	1.0000	56	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.26
	TSC2	p.S1774T	1.0000	843	Missense_Mutation	Likely Neutral	Likely Neutral	v4.26

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