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Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
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Sample
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Patient ID
133474
Open Patient
Specimen ID
215-R5
Open Specimen
Sample ID
ORIGINATOR
Disease Body Location
Digestive/Gastrointestinal
OncoTree Code
IHCH
CTEP SDC Code
10004669 - Cholangiocar.- intra/extrahepatic
PDM Type
PDX
Tissue Type
Resection
Patient/Originating
Specimen
Yes
No
Passage of this Sample
Sample
Notes
Pathology Data (if available)
Pathology Data
View
Tumor
Grade
Tumor
Content
Necrosis
Stromal
Inflammatory
Cells
Low Magnification Image
High Magnification Image
High grade or poorly differentiated
30%
20%
50%
2+ (Moderate)
Export
Genomic Analysis
External Genetic Analysis Data
A data file is available if a Download link is displayed:
Somatic Mutations Associated with Cancer (*.vcf and *.maf)
Whole Exome Sequencing (*.vcf)
Download
Ver:
2.0.4.51.0
Whole Exome FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.4.51.0
RNASeq FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.4.21.0
RNASeq Transcripts per Million (TPM; *.RSEM.genes.results and *.RSEM.isoforms.results tab-delimited text file)
Download RSEM (genes)
Download RSEM (isoforms)
Ver:
2.0.4.21.0
OncoKB Gene Panel
View
Hugo
Symbol
HGVS Protein
Change
Variant Allele
Frequency
Total
Reads
Variant
Class
Oncogenicity
Predicted
Functional Effect
OncoKB
Version
BRAF
p.V600E
0.3147
143
Missense_Mutation
Oncogenic
Gain-of-function
v4.26
BRIP1
p.R173C
0.4571
175
Missense_Mutation
Inconclusive
Inconclusive
v4.26
MSH3
p.A70Qfs*13
0.4264
129
Frame_Shift_Ins
Likely Oncogenic
Likely Loss-of-function
v4.26
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