Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

625472

104-R

Value Required

H67WG0

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	75%	15%	10%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ASXL1	p.G645Wfs*12	0.0000	193	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ATRX	p.N633Tfs*16	0.5129	310	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	BCOR	p.R1514*	0.5000	62	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	BCORL1	p.M644Hfs*21	0.4879	662	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	BCORL1	p.Q798*	0.5304	609	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600E	1.0000	94	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	BRCA2	p.Y1220Ifs*8	0.6790	352	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	CASP8	p.R292W	0.5063	239	Missense_Mutation	Likely Oncogenic	Unknown	v3.14
	CCND3	p.P284L	1.0000	148	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v3.14
	CDKN1A	p.R83Gfs*65	0.4529	276	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	CDKN2A	p.D84N	0.5634	71	Missense_Mutation	Likely Oncogenic	Loss-of-function	v3.14
	DIS3	p.I678Ffs*59	0.2958	213	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	EPHA3	p.E647Rfs*9	0.5946	148	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ESCO2	p.T254Nfs*27	0.4612	206	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	FOXL2	p.K193Sfs*78	0.4490	196	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	INPPL1	p.R1156Gfs*46	0.5045	111	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	JARID2	p.A396Rfs*18	0.5022	231	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2A	p.K3828Rfs*31	0.4815	270	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2D	p.R5340*	0.5800	100	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	MGA	p.D2578Tfs*10	0.5202	321	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	MSH2	p.A230Lfs*16	0.5038	260	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	MSH3	p.K383Rfs*32	0.5281	89	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	PIK3CA	p.C420R	0.4815	189	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	RB1	p.R320*	0.8108	111	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	RB1	p.R418Kfs*10	0.2917	144	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	RIT1	p.A57D	0.2023	687	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v3.14
	RNF43	p.P660Vfs*41	1.0000	192	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	TET1	p.N486Ifs*6	0.4595	222	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14

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