Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

292921

168-R

Value Required

WS0

Disease Body Location

Digestive/Gastrointestinal

PAAD

10052747 - Adenocarcinoma - pancreas

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

0

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	High grade or poorly differentiated	75%	20%	5%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	APC	p.E582Gfs*20	0.3162	136	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.P1594Afs*38	0.6815	496	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.K2248*	0.7023	262	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1A	p.S617Qfs*2	0.5432	81	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1A	p.R1461*	0.4952	315	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1B	p.N2124Tfs*21	0.4974	193	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID4B	p.T939Rfs*2	0.5059	255	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ASXL1	p.G646Wfs*12	0.4386	114	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	AXIN2	p.G665Afs*24	0.4828	145	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	BCORL1	p.G1682Rfs*4	0.9070	43	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRCA2	p.R3384*	0.5055	273	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	CBL	p.R206*	0.4646	127	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	CD58	p.Q59Tfs*4	0.5155	97	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	CIITA	p.G655Rfs*94	0.4771	109	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	DNMT3A	p.F414Lfs*7	0.4161	161	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	ELF3	p.X200_splice	0.4474	76	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FANCC	p.X444_splice	0.6296	27	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FAT1	p.K2139Sfs*8	0.5255	333	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	GATA3	p.S237Afs*28	0.5273	110	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	GNAS	p.R201H	0.4556	248	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	KMT2B	p.K553Nfs*52	0.4491	334	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2B	p.V788*	0.4615	117	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2B	p.G1879Vfs*16	0.3918	97	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.K2797Rfs*26	0.5776	161	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.R2609*	0.4960	250	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2D	p.L2331*	0.6092	174	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KRAS	p.G12D	0.6490	245	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	MEN1	p.R521Gfs*43	0.0000	76	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	MET	p.T992I	0.4764	191	Missense_Mutation	Inconclusive	Likely Gain-of-function	v3.14
	MSH2	p.W345*	1.0000	69	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	NPM1	p.V156Sfs*6	0.3988	168	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	PAX5	p.A322Rfs*19	0.4733	150	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTPRS	p.V1025Pfs*35	0.3303	109	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	RAD50	p.E723Gfs*5	0.2569	362	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	SETD2	p.X2477_splice	0.4692	130	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	SETD2	p.T305Qfs*35	0.4957	115	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	SH2B3	p.A111Pfs*86	0.3298	94	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	SPEN	p.A2251Qfs*102	0.4615	221	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.R267Q	0.4565	46	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.G244C	0.5167	120	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	TSC2	p.G654Lfs*2	0.6136	88	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TSC2	p.X1690_splice	0.3710	124	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	ZFHX3	p.R1893Gfs*35	0.4874	119	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14

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