Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

292921

168-R

Value Required

WS0Y22

Disease Body Location

Digestive/Gastrointestinal

PAAD

10052747 - Adenocarcinoma - pancreas

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	High grade or poorly differentiated	55%	30%	15%	<Unknown>

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	APC	p.E582Gfs*20	0.3033	122	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.P1594Afs*38	0.6556	392	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.K2248*	0.6141	241	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1A	p.S617Qfs*2	0.4815	54	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1A	p.R1461*	0.4802	252	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1B	p.N2124Tfs*21	0.5100	200	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID4B	p.T939Rfs*2	0.4958	240	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ASXL1	p.G646Wfs*12	0.4859	142	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	AXIN2	p.G665Afs*24	0.5245	143	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	BCORL1	p.G1682Rfs*4	0.9512	41	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRCA2	p.R3384*	0.4730	148	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	CBL	p.R206*	0.4691	81	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	CD58	p.Q59Tfs*4	0.4512	82	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	CIITA	p.G655Rfs*94	0.5462	130	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	CYLD	p.E579Kfs*5	0.5035	141	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	DNMT3A	p.F414Lfs*7	0.5223	157	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	ELF3	p.X200_splice	0.4894	94	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FANCC	p.X444_splice	0.4091	22	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FAT1	p.K2139Sfs*8	0.4917	301	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	GATA3	p.S237Afs*28	0.4234	111	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	GNAS	p.R201H	0.4439	223	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	KMT2B	p.K553Nfs*52	0.5287	348	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2B	p.V788*	0.5294	153	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2B	p.G1879Vfs*16	0.4304	79	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.K2797Rfs*26	0.4706	119	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.R2609*	0.5400	200	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2D	p.L2331*	0.7219	187	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KRAS	p.G12D	0.6429	210	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	MEN1	p.R521Gfs*43	0.0000	72	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	MET	p.T992I	0.5000	158	Missense_Mutation	Inconclusive	Likely Gain-of-function	v3.14
	MSH2	p.W345*	1.0000	46	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	NPM1	p.V156Sfs*6	0.3092	152	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	PAX5	p.A322Rfs*19	0.3920	125	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTPRS	p.V1025Pfs*20	0.2169	83	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	RAD50	p.E723Gfs*5	0.2230	305	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	SETD2	p.X2477_splice	0.3802	121	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	SETD2	p.T305Qfs*35	0.5233	86	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	SH2B3	p.A111Pfs*86	0.3426	108	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	SPEN	p.A2251Qfs*102	0.5271	203	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.R267Q	0.5556	36	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.G244C	0.4615	91	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	TSC2	p.G654Lfs*2	0.4706	85	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TSC2	p.X1690_splice	0.3984	128	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	ZFHX3	p.R1893Gfs*35	0.4615	104	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14

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