Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

292921

168-R

Value Required

WS0Y23Y42

Disease Body Location

Digestive/Gastrointestinal

PAAD

10052747 - Adenocarcinoma - pancreas

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

2

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	High grade or poorly differentiated	60%	10%	30%	2+ (Moderate)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	APC	p.E582Gfs*20	0.3060	183	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.P1594Afs*38	0.6281	484	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.K2248*	0.6494	308	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1A	p.S617Qfs*2	0.4578	83	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1A	p.R1461*	0.5079	254	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1B	p.N2124Tfs*21	0.3402	241	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID4B	p.T939Rfs*2	0.3646	288	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ASXL1	p.G646Wfs*12	0.4640	125	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	AXIN2	p.G665Afs*24	0.5098	153	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	BCORL1	p.G1682Rfs*4	0.8448	58	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRCA2	p.R3384*	0.4768	237	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	CBL	p.R206*	0.4227	97	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	CD58	p.Q59Tfs*4	0.3929	112	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	CIITA	p.G655Rfs*94	0.4388	139	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	CYLD	p.E579Kfs*5	0.3226	155	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	DNMT3A	p.F414Lfs*7	0.5275	182	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	ELF3	p.X200_splice	0.4945	91	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FANCC	p.X444_splice	0.5750	40	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FAT1	p.K2139Sfs*8	0.4463	354	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	FLCN	p.H429Tfs*39	0.1585	82	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	GATA3	p.S237Afs*28	0.5072	138	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	GNAS	p.R201H	0.4573	234	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	JARID2	p.R425Gfs*36	0.1688	154	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2B	p.K553Nfs*52	0.5412	364	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2B	p.V788*	0.4877	162	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2B	p.G1879Vfs*16	0.5926	81	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.K2797Rfs*26	0.5354	198	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.R2609*	0.5133	263	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2D	p.L2331*	0.6154	169	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KRAS	p.G12D	0.6458	240	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	MEN1	p.R521Gfs*43	0.0000	72	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	MET	p.T992I	0.5696	158	Missense_Mutation	Inconclusive	Likely Gain-of-function	v3.14
	MSH2	p.W345*	1.0000	100	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	NPM1	p.V156Sfs*6	0.2787	183	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	PAX5	p.A322Rfs*19	0.3836	159	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTPRS	p.V1025Pfs*20	0.1923	104	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	RAD50	p.E723Gfs*5	0.1971	411	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	SETD2	p.X2477_splice	0.3942	137	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	SETD2	p.T305Qfs*35	0.4677	124	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	SH2B3	p.A111Pfs*86	0.2941	119	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	SPEN	p.A2251Qfs*102	0.3775	249	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.R267Q	0.4524	42	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.G244C	0.5472	106	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	TSC2	p.G654Lfs*2	0.4842	95	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TSC2	p.X1690_splice	0.3655	145	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	ZFHX3	p.R1893Gfs*35	0.5000	118	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14

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