Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

695669

166-R

Value Required

WR6

Disease Body Location

Skin

MEL

10053571 - Melanoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

0

Sample
Notes

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Pathology Data (if available)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ARID1B	p.E2188*	0.5105	237	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID2	p.R274*	1.0000	50	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600K	0.6944	72	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	EGFR	p.S306L	0.4576	236	Missense_Mutation	Likely Neutral	Likely Neutral	v3.14
	KMT2B	p.W1786*	0.5234	107	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	NF1	p.R1241*	0.4027	149	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	NF1	p.R2450*	0.5132	76	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTPRD	p.R1088C	0.4207	164	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	RAC1	p.P29S	0.5122	82	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	SMARCA4	p.R1135Q	0.5472	106	Missense_Mutation	Likely Oncogenic	Unknown	v3.14
	TP53BP1	p.R639*	0.4798	198	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

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