Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

292921

168-R

Value Required

WS1V44VC0

Disease Body Location

Digestive/Gastrointestinal

PAAD

10052747 - Adenocarcinoma - pancreas

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

2

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	High grade or poorly differentiated	65%	20%	15%	<Unknown>

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	APC	p.E582Gfs*20	0.3649	74	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.P1594Afs*38	0.6618	343	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.K2248*	0.6431	255	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1A	p.S617Qfs*2	0.4259	54	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1A	p.R1461*	0.5162	277	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1B	p.G660Efs*8	0.4022	179	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1B	p.N2124Tfs*21	0.4824	170	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ASXL1	p.G646Wfs*12	0.4600	100	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	AXIN2	p.G665Afs*24	0.4426	122	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRCA2	p.R3384*	0.4832	149	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	CD58	p.Q59Tfs*4	0.4507	71	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	CIITA	p.G655Rfs*94	0.4593	135	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	CRBN	p.X383_splice	0.3229	96	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	CTCF	p.T204Nfs*26	0.5437	160	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	DNMT3A	p.F414Lfs*7	0.5212	165	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	ELF3	p.X200_splice	0.5841	113	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FANCC	p.X444_splice	0.5000	24	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FAT1	p.K2139Sfs*8	0.4887	221	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	GATA3	p.S237Afs*28	0.4012	167	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	GNAS	p.R201H	0.4375	144	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	HNF1A	p.P291Qfs*51	0.1981	313	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2B	p.K553Nfs*52	0.5172	524	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2B	p.V788*	0.5290	138	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2B	p.G1879Vfs*16	0.4684	79	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.K2797Rfs*26	0.4409	127	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.R2609*	0.5000	186	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2D	p.L2331*	0.6856	194	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KRAS	p.G12D	0.6591	132	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	MEN1	p.R521Gfs*43	0.0000	80	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	MET	p.T992I	0.5308	130	Missense_Mutation	Inconclusive	Likely Gain-of-function	v3.14
	MSH2	p.W345*	1.0000	82	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	NPM1	p.V156Sfs*6	0.4516	93	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	PAX5	p.A322Rfs*19	0.3899	159	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	PMS1	p.I654Dfs*21	0.3043	138	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTCH1	p.N97Tfs*20	0.5625	96	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTPRS	p.V1025Pfs*35	0.4024	82	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	RAD50	p.E723Gfs*5	0.2685	257	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	SETD2	p.X2477_splice	0.4875	80	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	SETD2	p.T305Qfs*35	0.5156	64	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	SH2B3	p.A111Pfs*86	0.3363	113	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	SPEN	p.A2251Qfs*102	0.4631	244	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TBX3	p.G529Afs*103	0.1226	106	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.R267Q	0.6383	47	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.G244C	0.5946	74	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	TSC2	p.G654Lfs*2	0.5441	68	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TSC2	p.X1690_splice	0.4583	120	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	ZFHX3	p.R1893Gfs*35	0.4592	98	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14

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