Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

695669

166-R

Value Required

WR6VC5

Disease Body Location

Skin

MEL

10053571 - Melanoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ARID1B	p.E2188*	0.4950	303	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID2	p.R274*	1.0000	62	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600K	0.6125	80	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	EGFR	p.S306L	0.4310	239	Missense_Mutation	Likely Neutral	Likely Neutral	v3.14
	KMT2B	p.W1786*	0.4677	124	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	NF1	p.R1241*	0.6429	196	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	NF1	p.R2450*	0.4286	105	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTPRD	p.R1088C	0.5170	176	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	RAC1	p.P29S	0.4750	80	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	SMARCA4	p.R1135Q	0.4580	131	Missense_Mutation	Likely Oncogenic	Unknown	v3.14
	TP53BP1	p.R639*	0.4864	257	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

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