Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

695669

166-R

Value Required

WR7V96

Disease Body Location

Skin

MEL

10053571 - Melanoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ARID1B	p.E2188*	0.4137	394	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID2	p.R274*	0.9853	68	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600K	0.6697	109	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	EGFR	p.S306L	0.5103	292	Missense_Mutation	Likely Neutral	Likely Neutral	v3.14
	KMT2B	p.W1786*	0.5266	169	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	NF1	p.R1241*	0.5244	246	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	NF1	p.R2450*	0.5128	117	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTPRD	p.R1088C	0.4304	230	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	RAC1	p.P29S	0.4397	116	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	SMARCA4	p.R1135Q	0.4851	134	Missense_Mutation	Likely Oncogenic	Unknown	v3.14
	TP53BP1	p.R639*	0.5184	272	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

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