Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

695669

166-R

Value Required

WR8VB8

Disease Body Location

Skin

MEL

10053571 - Melanoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	APC	p.S457Lfs*9	1.0000	30	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID1B	p.E2188*	0.4500	360	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	ARID2	p.R274*	1.0000	59	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600K	0.7558	86	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	EGFR	p.S306L	0.4429	280	Missense_Mutation	Likely Neutral	Likely Neutral	v3.14
	KMT2B	p.W1786*	0.4545	143	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	NF1	p.R1241*	0.4943	261	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	NF1	p.R2450*	0.5748	127	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTPRD	p.R1088C	0.4691	243	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	RAC1	p.P29S	0.4038	104	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	SMARCA4	p.R1135Q	0.4203	138	Missense_Mutation	Likely Oncogenic	Unknown	v3.14
	TP53BP1	p.R639*	0.4944	269	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

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