Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

128783

104-T

Value Required

VJ7WA3YF0

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Tumor Biopsy

Patient/Originating
Specimen

Passage of this Sample

2

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	35%	50%	15%	2+ (Moderate)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	APC	p.E1309Dfs*4	0.3884	327	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.H1349Tfs*5	0.5288	208	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	KRAS	p.G13D	0.6667	168	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	PIK3CA	p.E542K	0.5543	175	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	SOX9	-	0.4842	285	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TCF7L2	p.R471C	0.6759	145	Missense_Mutation	Likely Oncogenic	Unknown	v3.14
	TP53	p.P152L	1.0000	121	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

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