Sample Editor (PDX or In Vitro Culture)

Skip to Content

NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

128783

104-T

Value Required

VJ6DZ2WS3

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Tumor Biopsy

Patient/Originating
Specimen

Passage of this Sample

2

Sample
Notes

Hide or show region

Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	55%	20%	25%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	APC	p.E1309Dfs*4	0.6364	253	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.H1349Tfs*5	0.2958	213	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	KRAS	p.G13D	0.4184	196	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	PIK3CA	p.E542K	0.4729	129	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	SOX9	-	0.4818	274	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TCF7L2	p.R471C	0.4867	226	Missense_Mutation	Likely Oncogenic	Unknown	v3.14
	TP53	p.P152L	1.0000	106	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

1 - 7