Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

128783

104-T

Value Required

VJ6DZ2WS2YL1

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Tumor Biopsy

Patient/Originating
Specimen

Passage of this Sample

3

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	50%	15%	35%	<Unknown>

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	APC	p.E1309Dfs*4	0.4752	282	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.H1349Tfs*5	0.5048	210	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	KRAS	p.G13D	0.4950	202	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	PIK3CA	p.E542K	0.4898	147	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	SOX9	-	0.4545	209	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TCF7L2	p.R471C	0.4451	164	Missense_Mutation	Likely Oncogenic	Unknown	v3.14
	TP53	p.P152L	1.0000	68	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

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