Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

997537

175-T

Value Required

HP1

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Tumor Biopsy

Patient/Originating
Specimen

Passage of this Sample

0

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	65%	20%	15%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ARID4B	p.T939Rfs*2	0.3869	411	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ATM	p.K2811Sfs*46	0.5125	80	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ATR	p.I774Yfs*5	0.5952	126	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600E	0.5062	81	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	BRCA2	p.T3085Qfs*19	0.5000	138	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	CDKN1B	p.D63Rfs*62	0.6648	528	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	CREBBP	p.K1565Rfs*70	0.4943	263	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	EPHA7	p.X33_splice	0.4928	138	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FAT1	p.X3402_splice	0.4186	172	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FAT1	p.N126Kfs*3	0.4609	512	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	HNF1A	p.P291Qfs*51	0.6398	472	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	JAK1	p.P861Tfs*4	0.5069	288	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.K2797Rfs*26	0.2039	103	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2D	p.Q2109Afs*46	0.2983	238	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	MSH3	p.K383Rfs*32	0.9894	94	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	PHOX2B	p.G268Afs*41	0.5271	129	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	PIK3R1	p.R461*	0.4844	64	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTEN	p.L57Wfs*42	0.5139	72	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTEN	p.K267Rfs*9	0.5034	145	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RAD50	p.K722Rfs*14	0.4650	314	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RECQL	p.V41Sfs*2	0.3708	329	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RNF43	p.G659Vfs*41	0.5046	216	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RNF43	p.R117Pfs*8	1.0000	182	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	SESN2	p.Q229Rfs*18	0.5498	271	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	SOX9	p.510Lext49	0.5297	202	Nonstop_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	SPEN	p.A2105Lfs*33	0.5202	173	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	SPEN	p.P2461Hfs*15	0.4600	487	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.R273C	0.4253	87	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	FANCL	p.Q99Rfs*17	0.4690	290	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14

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