Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

425362

245-T

Value Required

AY7U79

Disease Body Location

Skin

MEL

10053571 - Melanoma

Value Required

PDX

Tumor Biopsy

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ARID1A	p.Q405*	0.4535	441	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600E	0.5542	83	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	CDK4	p.R24H	1.0000	136	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v3.14
	EP400	p.Q2727Hfs*51	1.0000	70	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	EP400	p.Q2727Afs*257	1.0000	71	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTPRT	p.W691*	0.3333	135	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.C277Y	1.0000	66	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

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