Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

425362

245-T

Value Required

AY7U82

Disease Body Location

Skin

MEL

10053571 - Melanoma

Value Required

PDX

Tumor Biopsy

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ARID1A	p.Q405*	0.4894	329	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600E	0.5921	76	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	CDK4	p.R24H	1.0000	108	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v3.14
	EP400	p.Q2727Hfs*51	1.0000	65	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	EP400	p.Q2727Afs*257	1.0000	71	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	PIK3R1	p.X582_splice	0.4660	191	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTPRT	p.W691*	0.2772	101	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.C277Y	1.0000	68	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

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