Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

997537

175-T

Value Required

HN1G62

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Tumor Biopsy

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	70%	15%	15%	<Unknown>

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ATM	p.K2811Sfs*46	0.5648	108	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ATR	p.I774Yfs*5	0.4468	141	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600E	0.4531	64	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	BRCA2	p.T3085Qfs*19	0.5388	206	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	CDKN1B	p.D63Rfs*62	0.6450	476	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	CREBBP	p.K1565Rfs*70	0.5534	253	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	EPHA7	p.X33_splice	0.5373	134	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FAT1	p.X3402_splice	0.4910	167	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FAT1	p.N126Kfs*3	0.5217	506	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	HNF1A	p.P291Qfs*51	0.6000	435	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	JAK1	p.P861Tfs*4	0.5088	283	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.K2797Rfs*26	0.5114	88	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2D	p.Q2109Afs*46	0.3118	263	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	MSH3	p.K383Rfs*32	1.0000	104	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	NBN	p.R466Gfs*18	0.1624	234	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	PHOX2B	p.G268Afs*41	0.4740	154	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	PIK3R1	p.R461*	0.5102	98	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTEN	p.L57Wfs*42	0.5116	43	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	PTEN	p.K267Rfs*9	0.4453	137	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RAD50	p.K722Rfs*14	0.5240	292	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RECQL	p.V41Sfs*2	0.3048	351	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RNF43	p.G659Vfs*41	0.5150	233	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RNF43	p.R117Pfs*8	1.0000	127	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	SESN2	p.Q229Rfs*18	0.4788	236	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	SOX9	p.510Lext49	0.5213	211	Nonstop_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	SPEN	p.A2105Lfs*33	0.4667	225	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	SPEN	p.P2461Hfs*15	0.4744	468	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.R273C	0.4559	68	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	FANCL	p.Q99Rfs*17	0.4953	319	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14

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