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Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
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Sample
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Patient ID
BL0293
Open Patient
Specimen ID
F563
Open Specimen
Sample ID
M672M291M321
Disease Body Location
Genitourinary
OncoTree Code
SCB
CTEP SDC Code
10018192 - Urothelial/bladder cancer, NOS
PDM Type
PDX
Tissue Type
Resection
Patient/Originating
Specimen
Yes
No
Passage of this Sample
5
Sample
Notes
Pathology Data (if available)
Pathology Data
View
Tumor
Grade
Tumor
Content
Necrosis
Stromal
Inflammatory
Cells
Low Magnification Image
High Magnification Image
High grade or poorly differentiated
80%
10%
10%
<Unknown>
Export
Genomic Analysis
External Genetic Analysis Data
A data file is available if a Download link is displayed:
Somatic Mutations Associated with Cancer (*.vcf and *.maf)
Whole Exome Sequencing (*.vcf)
Download
Ver:
2.0.1.50.0
Whole Exome FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
1.2
RNASeq FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
1.2
RNASeq Transcripts per Million (TPM; *.RSEM.genes.results and *.RSEM.isoforms.results tab-delimited text file)
Download RSEM (genes)
Download RSEM (isoforms)
Ver:
2.0.1.4.0
OncoKB Gene Panel
View
Hugo
Symbol
HGVS Protein
Change
Variant Allele
Frequency
Total
Reads
Variant
Class
Oncogenicity
Predicted
Functional Effect
OncoKB
Version
ARID1A
p.S138*
1.0000
169
Nonsense_Mutation
Likely Oncogenic
Likely Loss-of-function
v3.14
BRCA2
p.R2034C
0.5636
110
Missense_Mutation
Inconclusive
Inconclusive
v3.14
PIK3CA
p.D549Y
0.1913
277
Missense_Mutation
Likely Oncogenic
Likely Gain-of-function
v3.14
RB1
p.R358*
1.0000
22
Nonsense_Mutation
Likely Oncogenic
Likely Loss-of-function
v3.14
TP53
p.R248Q
1.0000
136
Missense_Mutation
Likely Oncogenic
Likely Loss-of-function
v3.14
Export
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