Sample Editor (PDX or In Vitro Culture)

View	Image Type	Notes	In Vitro Image
	Light Microscopy	Cells grown on plastic as adherent monolayer 20x magnification, Passage 21
	Xenograft from In Vitro Culture	20x image of cell culture-derived xenograft; Diagnosis confirmed

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Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.4.51.0

2.0.4.51.0

2.0.4.21.0

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2.0.4.21.0

OncoKB Gene Panel

Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
None Found	p.K437Rfs*5	0.9895	286	Frame_Shift_Del	Inconclusive	Likely Loss-of-function	v4.22
APC	p.E582Gfs*20	0.2430	107	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.22
APC	p.P1594Afs*38	0.6238	420	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.22
APC	p.K2248*	0.6448	366	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.22
ARID1A	p.S617Qfs*2	0.4938	81	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
ARID1A	p.R1461*	0.5179	392	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.22
ARID1B	p.G401Afs*29	0.2414	290	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
ARID1B	p.N2124Tfs*21	0.4720	286	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
ARID4B	p.T939Rfs*2	0.4251	167	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
ASXL1	p.G646Wfs*12	0.4405	168	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.22
ASXL1	p.S1335Vfs*115	0.2902	255	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
AXIN2	p.G665Afs*24	0.5410	183	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
BCORL1	p.G1682Rfs*4	0.9712	104	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.22
BRCA2	p.R3384*	0.4754	183	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.22
CBL	p.R206*	0.5252	139	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.22
CD58	p.Q59Tfs*4	0.5181	83	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.22
CIITA	p.G655Rfs*94	0.4183	208	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.22
CTR9	p.S774Vfs*3	0.4832	149	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
CYLD	p.E579Kfs*5	0.1919	99	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
DNMT3A	p.F414Lfs*7	0.4910	277	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.22
ELF3	p.X200_splice	0.4598	174	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v4.22
FANCC	p.X444_splice	0.3793	29	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v4.22
FAT1	p.K2139Sfs*8	0.5070	284	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
GATA3	p.S237Afs*28	0.5045	333	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
GNAS	p.R201H	0.4745	274	Missense_Mutation	Oncogenic	Gain-of-function	v4.22
KMT2B	p.K553Nfs*52	0.5063	869	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
KMT2B	p.V788*	0.5230	304	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
KMT2B	p.G1879Vfs*16	0.4795	244	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
KMT2C	p.K2797Rfs*26	0.5610	123	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
KMT2C	p.R2609*	0.4595	296	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.22
KMT2D	p.L2331*	0.6718	259	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
KRAS	p.G12D	0.6646	161	Missense_Mutation	Oncogenic	Gain-of-function	v4.22
MAP3K1	p.X1372_splice	0.2162	222	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v4.22
MEN1	p.R521Gfs*43	0.0000	130	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
MET	p.T992I	0.4843	223	Missense_Mutation	Inconclusive	Inconclusive	v4.22
MSH2	p.W345*	1.0000	108	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.22
NPM1	p.V156Sfs*6	0.2887	97	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.22
PAX5	p.A322Rfs*19	0.1328	241	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.22
PTPRS	p.V1025Pfs*35	0.3623	138	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.22
RAD50	p.E723Gfs*5	0.3071	254	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.22
SETD2	p.X2477_splice	0.4516	93	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v4.22
SETD2	p.T305Qfs*35	0.4138	58	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
SH2B3	p.A111Pfs*86	0.2687	160	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
SPEN	p.A2251Qfs*102	0.5015	339	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
STK11	p.K84del	0.4696	247	In_Frame_Del	Likely Neutral	Likely Neutral	v4.22
TP53	p.R267Q	0.5306	49	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.22
TP53	p.G244C	0.5756	172	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.22
TSC2	p.G654Lfs*2	0.4433	203	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
TSC2	p.X1690_splice	0.3547	234	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v4.22
ZFHX3	p.R1893Gfs*35	0.4526	137	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
ARHGAP35	p.K945Rfs*3	1.0000	165	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22
BRSK1	p.R379Pfs*54	0.4704	608	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.22
CHD2	p.Q1392Tfs*17	0.3889	90	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.22
HIRA	p.R755Kfs*67	0.4420	319	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.22
MBD4	p.E314Kfs*4	0.4934	152	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.22

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