Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

BL0293

F563

Value Required

M671

Disease Body Location

Genitourinary

SCB

10018192 - Urothelial/bladder cancer, NOS

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

3

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	High grade or poorly differentiated	90%	5%	5%	<Unknown>

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ARID1A	p.S138*	0.9892	186	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRCA2	p.R2034C	0.4054	111	Missense_Mutation	Inconclusive	Inconclusive	v3.14
	PIK3CA	p.D549Y	0.1731	260	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v3.14
	RB1	p.R358*	1.0000	29	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.R248Q	1.0000	105	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

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