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Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
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Sample
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Patient ID
144983
Open Patient
Specimen ID
106-R
Open Specimen
Sample ID
EA3
Disease Body Location
Gynecologic
OncoTree Code
HGONEC
CTEP SDC Code
10033272 - Ovarian cancer, NOS
PDM Type
PDX
Tissue Type
Resection
Patient/Originating
Specimen
Yes
No
Passage of this Sample
0
Sample
Notes
Pathology Data (if available)
Pathology Data
View
Tumor
Grade
Tumor
Content
Necrosis
Stromal
Inflammatory
Cells
Low Magnification Image
High Magnification Image
High grade or poorly differentiated
80%
5%
15%
<Unknown>
Export
Genomic Analysis
External Genetic Analysis Data
A data file is available if a Download link is displayed:
Somatic Mutations Associated with Cancer (*.vcf and *.maf)
Whole Exome Sequencing (*.vcf)
Download
Ver:
2.0.2.51.0
Whole Exome FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.51.0
RNASeq FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.4.0
RNASeq Transcripts per Million (TPM; *.RSEM.genes.results and *.RSEM.isoforms.results tab-delimited text file)
Download RSEM (genes)
Download RSEM (isoforms)
Ver:
2.0.2.4.0
OncoKB Gene Panel
View
Hugo
Symbol
HGVS Protein
Change
Variant Allele
Frequency
Total
Reads
Variant
Class
Oncogenicity
Predicted
Functional Effect
OncoKB
Version
CDH1
p.A617T
0.5836
293
Missense_Mutation
Likely Oncogenic
Loss-of-function
v3.14
CTNNB1
p.D32N
0.4522
157
Missense_Mutation
Likely Oncogenic
Gain-of-function
v3.14
MED12
p.D23Y
0.4791
359
Missense_Mutation
Oncogenic
Likely Loss-of-function
v3.14
PIK3CA
p.H1047R
0.5023
663
Missense_Mutation
Oncogenic
Gain-of-function
v3.14
PPP2R1A
p.R183W
0.5466
161
Missense_Mutation
Likely Oncogenic
Likely Loss-of-function
v3.14
SMARCA4
p.E1292*
0.9977
431
Nonsense_Mutation
Likely Oncogenic
Likely Loss-of-function
v3.14
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