Sample Editor (PDX or In Vitro Culture)

Skip to Content

NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

134843

207-R

Value Required

W4EQ07C24

Disease Body Location

Head and Neck

LXSC

10023843 - Laryngeal squamous cell carcinoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

2

Sample
Notes

Hide or show region

Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Low grade or well differentiated	80%	0%	20%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.4.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	BRCA2	p.D1420Y	1.0000	44	Missense_Mutation	Inconclusive	Inconclusive	v3.14
	KMT2D	p.T2780Rfs*7	0.4735	340	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	NOTCH1	p.G446Afs*185	0.9922	383	Frame_Shift_Del	Oncogenic	Likely Loss-of-function	v3.14
	PBRM1	p.Q188*	1.0000	166	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	RASA1	p.Y712Ifs*14	0.9864	147	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.Q192*	1.0000	282	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

1 - 6