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Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
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Sample
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Patient ID
134843
Open Patient
Specimen ID
207-R
Open Specimen
Sample ID
W6YQG2
Disease Body Location
Head and Neck
OncoTree Code
LXSC
CTEP SDC Code
10023843 - Laryngeal squamous cell carcinoma
PDM Type
PDX
Tissue Type
Resection
Patient/Originating
Specimen
Yes
No
Passage of this Sample
1
Sample
Notes
Pathology Data (if available)
Pathology Data
View
Tumor
Grade
Tumor
Content
Necrosis
Stromal
Inflammatory
Cells
Low Magnification Image
High Magnification Image
<Unknown>
10%
0%
90%
1+ (Low)
Export
Genomic Analysis
External Genetic Analysis Data
A data file is available if a Download link is displayed:
Somatic Mutations Associated with Cancer (*.vcf and *.maf)
Whole Exome Sequencing (*.vcf)
Download
Ver:
2.0.2.51.0
Whole Exome FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.51.0
RNASeq FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.4.0
RNASeq Transcripts per Million (TPM; *.RSEM.genes.results and *.RSEM.isoforms.results tab-delimited text file)
Download RSEM (genes)
Download RSEM (isoforms)
Ver:
2.0.2.4.0
OncoKB Gene Panel
View
Hugo
Symbol
HGVS Protein
Change
Variant Allele
Frequency
Total
Reads
Variant
Class
Oncogenicity
Predicted
Functional Effect
OncoKB
Version
BRCA2
p.D1420Y
1.0000
41
Missense_Mutation
Inconclusive
Inconclusive
v3.14
KMT2D
p.T2780Rfs*7
0.5079
254
Frame_Shift_Del
Likely Oncogenic
Likely Loss-of-function
v3.14
NOTCH1
p.G446Afs*185
0.9926
270
Frame_Shift_Del
Oncogenic
Likely Loss-of-function
v3.14
PBRM1
p.Q188*
0.9861
144
Nonsense_Mutation
Likely Oncogenic
Likely Loss-of-function
v3.14
RASA1
p.Y712Ifs*14
0.9560
91
Frame_Shift_Ins
Likely Oncogenic
Likely Loss-of-function
v3.14
TP53
p.Q192*
0.9959
243
Nonsense_Mutation
Likely Oncogenic
Likely Loss-of-function
v3.14
Export
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