Skip to Content
Contact PDMR
|
PDMR Database User Guide
Home
Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
Reports
Search
Sample
Cancel
Patient ID
172845
Open Patient
Specimen ID
142-T
Open Specimen
Sample ID
M80J08J61
Disease Body Location
Digestive/Gastrointestinal
OncoTree Code
COAD
CTEP SDC Code
10009951 - Adenocarcinoma - colon
PDM Type
PDX
Tissue Type
Tumor Biopsy
Patient/Originating
Specimen
Yes
No
Passage of this Sample
2
Sample
Notes
Pathology Data (if available)
Pathology Data
View
Tumor
Grade
Tumor
Content
Necrosis
Stromal
Inflammatory
Cells
Low Magnification Image
High Magnification Image
Intermediate grade or moderately differentiated
75%
15%
10%
1+ (Low)
Export
Genomic Analysis
External Genetic Analysis Data
A data file is available if a Download link is displayed:
Somatic Mutations Associated with Cancer (*.vcf and *.maf)
Whole Exome Sequencing (*.vcf)
Download
Ver:
2.0.1.50.0
Whole Exome FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
1.2
RNASeq FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
1.2
RNASeq Transcripts per Million (TPM; *.RSEM.genes.results and *.RSEM.isoforms.results tab-delimited text file)
Download RSEM (genes)
Download RSEM (isoforms)
Ver:
2.0.1.13.0
OncoKB Gene Panel
View
Hugo
Symbol
HGVS Protein
Change
Variant Allele
Frequency
Total
Reads
Variant
Class
Oncogenicity
Predicted
Functional Effect
OncoKB
Version
AMER1
p.R497*
0.7107
159
Nonsense_Mutation
Likely Oncogenic
Likely Loss-of-function
v3.14
APC
p.N1535Mfs*30
1.0000
355
Frame_Shift_Del
Likely Oncogenic
Likely Loss-of-function
v3.14
KRAS
p.G12D
0.6667
216
Missense_Mutation
Oncogenic
Gain-of-function
v3.14
MEF2B
p.E77K
0.2952
210
Missense_Mutation
Oncogenic
Loss-of-function
v3.14
PIK3CA
p.E545K
0.5000
134
Missense_Mutation
Oncogenic
Gain-of-function
v3.14
Export
1 - 5