Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

885512

296-R

Value Required

AL-KAG_AL-Q33

Disease Body Location

Breast

MMBC

10006190 - Invasive breast carcinoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	High grade or poorly differentiated	40%	50%	10%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.4.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	KMT2C	p.R2028*	1.0000	139	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2D	p.Q3845*	0.3174	419	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	RB1	p.S565*	1.0000	36	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	STK11	p.G251D	1.0000	339	Missense_Mutation	Likely Oncogenic	Unknown	v3.14
	TP53	p.I195T	1.0000	399	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

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