Skip to Content
Contact PDMR
|
PDMR Database User Guide
Home
Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
Reports
Search
Sample
Cancel
Patient ID
748385
Open Patient
Specimen ID
122-R
Open Specimen
Sample ID
X1GM092J94
Disease Body Location
Breast
OncoTree Code
IDC
CTEP SDC Code
10006190 - Invasive breast carcinoma
PDM Type
PDX
Tissue Type
Resection
Patient/Originating
Specimen
Yes
No
Passage of this Sample
2
Sample
Notes
Pathology Data (if available)
Pathology Data
View
Tumor
Grade
Tumor
Content
Necrosis
Stromal
Inflammatory
Cells
Low Magnification Image
High Magnification Image
High grade or poorly differentiated
40%
50%
10%
1+ (Low)
Export
Genomic Analysis
External Genetic Analysis Data
A data file is available if a Download link is displayed:
Somatic Mutations Associated with Cancer (*.vcf and *.maf)
Whole Exome Sequencing (*.vcf)
Download
Ver:
2.0.2.51.0
Whole Exome FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.51.0
RNASeq FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.4.0
RNASeq Transcripts per Million (TPM; *.RSEM.genes.results and *.RSEM.isoforms.results tab-delimited text file)
Download RSEM (genes)
Download RSEM (isoforms)
Ver:
2.0.2.4.0
OncoKB Gene Panel
View
Hugo
Symbol
HGVS Protein
Change
Variant Allele
Frequency
Total
Reads
Variant
Class
Oncogenicity
Predicted
Functional Effect
OncoKB
Version
ERBB2
p.I654V
0.9742
155
Missense_Mutation
Inconclusive
Inconclusive
v3.14
PTEN
p.Q214*
1.0000
323
Nonsense_Mutation
Likely Oncogenic
Likely Loss-of-function
v3.14
RUNX1
p.T358Afs*227
0.4307
274
Frame_Shift_Del
Likely Oncogenic
Likely Loss-of-function
v3.14
STK11
p.F354L
0.9721
394
Missense_Mutation
Likely Neutral
Likely Neutral
v3.14
TP53
p.H179P
0.9928
276
Missense_Mutation
Likely Oncogenic
Likely Loss-of-function
v3.14
Export
1 - 5