Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

748385

122-R

Value Required

X1GH07

Disease Body Location

Breast

IDC

10006190 - Invasive breast carcinoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	High grade or poorly differentiated	50%	10%	40%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.4.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ATXN2	p.Q180Hfs*26	0.1020	98	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ERBB2	p.I654V	1.0000	108	Missense_Mutation	Inconclusive	Inconclusive	v3.14
	PTEN	p.Q214*	1.0000	298	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	RUNX1	p.T358Afs*227	0.3889	216	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	STK11	p.F354L	0.9935	310	Missense_Mutation	Likely Neutral	Likely Neutral	v3.14
	TP53	p.H179P	1.0000	186	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

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