Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

748385

122-R

Value Required

X1GH07G96_AL-KU5

Disease Body Location

Breast

IDC

10006190 - Invasive breast carcinoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

3

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	High grade or poorly differentiated	60%	25%	15%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.4.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ATXN2	p.Q180Hfs*26	0.1061	66	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ERBB2	p.I654V	0.9877	162	Missense_Mutation	Inconclusive	Inconclusive	v3.14
	PTEN	p.Q214*	0.9967	303	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	RUNX1	p.T358Afs*227	0.4082	267	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	STK11	p.F354L	0.9948	382	Missense_Mutation	Likely Neutral	Likely Neutral	v3.14
	TP53	p.H179P	0.9928	278	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

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