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Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
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Sample
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Patient ID
295223
Open Patient
Specimen ID
140-R
Open Specimen
Sample ID
ORIGINATOR
Disease Body Location
Head and Neck
OncoTree Code
HNSC
CTEP SDC Code
10060121 - H & N squamous cell car., NOS
PDM Type
Patient/Originator Specimen
Tissue Type
Resection
Patient/Originating
Specimen
Yes
No
Passage of this Sample
Sample
Notes
Pathology Data (if available)
Pathology Data
View
Tumor
Grade
Tumor
Content
Necrosis
Stromal
Inflammatory
Cells
Low Magnification Image
High Magnification Image
High grade or poorly differentiated
40%
2%
58%
2+ (Moderate)
Export
Genomic Analysis
External Genetic Analysis Data
A data file is available if a Download link is displayed:
Somatic Mutations Associated with Cancer (*.vcf and *.maf)
Whole Exome Sequencing (*.vcf)
Whole Exome FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
RNASeq FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
1.2
RNASeq Transcripts per Million (TPM; *.RSEM.genes.results and *.RSEM.isoforms.results tab-delimited text file)
Download RSEM (genes)
Download RSEM (isoforms)
Ver:
2.0.1.13.0
OncoKB Gene Panel
no data found